label figures in rmarkdown

For example: Internal links are currently supported for HTML formats (including HTML slide shows and EPUB), LaTeX, and ConTeXt. It will appear in TeX output as ~ and in HTML and XML as \  or \ . (It will be used, for example, in the title of standalone LaTeX or HTML output.) For example: Pandoc’s Markdown allows footnotes, using the following syntax: The identifiers in footnote references may not contain spaces, tabs, or newlines. The package brings some features of the “officer” package in R Markdown documents such as : He is also adept at creating PowerPoint with R Markdown. To set the highlighting style, use --highlight-style. All of the metadata will appear in a single block at the beginning of the document. Note that pandoc-citeproc --bib2json and pandoc-citeproc --bib2yaml can produce .json and .yaml files from any of the supported formats. The cells of grid tables may contain arbitrary block elements (multiple paragraphs, code blocks, lists, etc.). For LaTeX or PDF output, you can also use [natbib] or [biblatex] to render bibliography. You can also produce a PDF slide show using LaTeX beamer. A “lazy” form, which requires the > character only on the first line of each block, is also allowed: Among the block elements that can be contained in a block quote are other block quotes. If the dashed line is flush with the header text on the left side but extends beyond it on the right, the column is left-aligned. Thus, for example, you can use LaTeX to include BibTeX citations: the material between the begin and end tags will be interpreted as raw LaTeX, not as Markdown. Bookdown cross-references enable you to easily link to figures, equations, and even arbitrary labels within a document. Parses PHP Markdown Extra abbreviation keys, like. The --mimetex option takes an optional URL as argument. To prevent all highlighting, use the --no-highlight flag. The resulting htex file may then be processed by [gladTeX], which will produce image files for each formula and an HTML file with links to these images. Fields with names ending in an underscore will be ignored by pandoc. – John Gruber. Pandoc behaves this way when the markdown_strict format is used; but by default, pandoc interprets material between HTML block tags as Markdown. the structuring of content into sections. The image’s alt text will be used as the caption. So the following is fine in pandoc, though not in most other implementations: In a shortcut reference link, the second pair of brackets may be omitted entirely: To link to another section of the same document, use the automatically generated identifier (see Header identifiers). R Markdown supports a reproducible workflow for dozens of static and dynamic output formats including HTML, PDF, MS … A backslash-escaped space is parsed as a nonbreaking space. No indentation is necessary: Like regular code blocks, fenced code blocks must be separated from surrounding text by blank lines. By default, these writers produce lists that display “all at once.” If you want your lists to display incrementally (one item at a time), use the -i option. As an alternative to specifying a bibliography file using --bibliography or the YAML metadata field bibliography, you can include the citation data directly in the references field of the document’s YAML metadata. A document may contain multiple metadata blocks. Causes anything between \( and \) to be interpreted as inline TeX math, and anything between \[ and \] to be interpreted as display TeX math. ref.label NULL A character vector of labels of the chunks from which the code of the current chunk is inherited. The numbered examples need not occur in a single list; each new list using @ will take up where the last stopped. Thus, the following yields a list with numbers followed by a single parenthesis, starting with 9, and a sublist with lowercase roman numerals: Pandoc will start a new list each time a different type of list marker is used. Pandoc behaves differently from Markdown.pl on some “edge cases” involving lists. But you can also structure the slide show into sections, as in the example above. Defaults are restored at end. To see why laziness is incompatible with relaxing the requirement of a blank line between items, consider the following example: Is this a single list item with two definitions of “bar,” the first of which is lazily wrapped, or two list items? These rules should, in most cases, allow one to determine the identifier from the header text. These rules are designed to support many different styles of slide show. Allow a list to occur right after a paragraph, with no intervening blank space. Remove everything up to the first letter (identifiers may not begin with a number or punctuation mark). For more information, see the pandoc-citeproc man page. The fancy_lists extension also allows ‘#’ to be used as an ordered list marker in place of a numeral: Pandoc also pays attention to the type of list marker used, and to the starting number, and both of these are preserved where possible in the output format. Dimensions are converted to inches for output in page-based formats like LaTeX. from being interpreted as a list item. That is, block quotes can be nested: If the > character is followed by an optional space, that space will be considered part of the block quote marker and not part of the indentation of the contents. This form is necessary when the field contains blank lines: Template variables will be set automatically from the metadata. In addition to standard indented code blocks, pandoc supports fenced code blocks. Convert all alphabetic characters to lowercase. If your goal is to It may appear either before or after the table. So, this will work: In an implicit reference link, the second pair of brackets is empty: Note: In Markdown.pl and most other Markdown implementations, reference link definitions cannot occur in nested constructions such as list items or block quotes. So. The link text will be used as the image’s alt text: An image occurring by itself in a paragraph will be rendered as a figure with a caption.4 (In LaTeX, a figure environment will be used; in HTML, the image will be placed in a div with class figure, together with a caption in a p with class caption.) Note: if your LaTeX template or any included header file call for the [csquotes] package, pandoc will detect this automatically and use \enquote{...} for quoted text. ; line, l./ll. Note: a drawback of this extension is that it precludes escaping ( and [. Ordered lists work just like bulleted lists, except that the items begin with enumerators rather than bullets. Table Positioning Available Parameters. For example: © 2006-2015 John MacFarlane (jgm@berkeley.edu). If a title prefix is specified with -T and no title block appears in the document, the title prefix will be used by itself as the HTML title. By default, pandoc-citeproc will use the Chicago Manual of Style author-date format. A minus sign (-) before the @ will suppress mention of the author in the citation. Note that YAML escaping rules must be followed. (Note: Pandoc works this way even when the markdown_strict format is specified. (The > need not start at the left margin, but it should not be indented more than three spaces.). A header at the slide level always starts a new slide. : Pandoc supports definition lists, using the syntax of PHP Markdown Extra with some extensions.2. (In that case, level 1 will be the slide level.) Markdown is designed to be easy to write, and, even more importantly, easy to read: A Markdown-formatted document should be publishable as-is, as plain text, without looking like it’s been marked up with tags or formatting instructions. By arranging multiple low-dimensional graphics of the same (or similar) high-dimensional data, one can put local summaries and patterns into a global context. To derive the identifier from the header text. In HTML output, titles will appear twice: once in the document head – this is the title that will appear at the top of the window in a browser – and once at the beginning of the document body. In beamer, the only header attribute that affects slides is the allowframebreaks class, which sets the allowframebreaks option, causing multiple slides to be created if the content overfills the frame. In order to do so, specify bibliography files as outlined above, and add --natbib or --biblatex argument to pandoc invocation. The special list marker @ can be used for sequentially numbered examples. The Markdown syntax guide is not explicit whether the four-space rule applies to all block-level content in a list item; it only mentions paragraphs and code blocks. Markdown documents. instead of giving the identifier explicitly: If there are multiple headers with identical text, the corresponding reference will link to the first one only, and you will need to use explicit links to link to the others, as described above. The opening $ must have a non-space character immediately to its right, while the closing $ must have a non-space character immediately to its left, and must not be followed immediately by a digit. A single hyphen (-) in an attribute context is equivalent to .unnumbered, and preferable in non-English documents. So, the procedure is: If the --webtex option is used, TeX formulas will be converted to tags that link to an external script that converts formulas to images. {officedown}, {flextable}, {rvg} and {mschart}. {officedown} was written to take advantage of the benefits of You can add “pauses” within a slide by including a paragraph containing three dots, separated by spaces: You can change the style of HTML slides by putting customized CSS files in $DATADIR/s5/default (for S5), $DATADIR/slidy (for Slidy), or $DATADIR/slideous (for Slideous), where $DATADIR is the user data directory (see --data-dir, above). This is useful for verse and addresses: The lines can be hard-wrapped if needed, but the continuation line must begin with a space. Trouble! Headers may be omitted in multiline tables as well as simple tables: It is possible for a multiline table to have just one row, but the row should be followed by a blank line (and then the row of dashes that ends the table), or the table may be interpreted as a simple table. Use a productive notebook interface to weave together narrative text and code to produce elegantly formatted output. Note: in reveal.js slide shows, if slide level is 2, a two-dimensional layout will be produced, with level 1 headers building horizontally and level 2 headers building vertically. Optionally, you may attach attributes to fenced or backtick code block using this syntax: Here mycode is an identifier, haskell and numberLines are classes, and startFrom is an attribute with value 100. However, as with other Markdown lists, you can “lazily” omit indentation except at the beginning of a paragraph or other block element: If you leave space before the definition (as in the example above), the text of the definition will be treated as a paragraph. However, if there are multiple paragraphs or other blocks in a list item, the first line of each must be indented. ; sub verbo, s.v./s.vv. Thus, for example, pandoc will turn. EPUB metadata may be specified using the --epub-metadata option, but if the source document is Markdown, it is better to use a YAML metadata block. The first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. To simulate a headerless table, include a header with blank cells. If you want a “loose” list, in which each item is formatted as a paragraph, put spaces between the items: The bullets need not be flush with the left margin; they may be indented one, two, or three spaces. rmarkdown, knitrは、Rのパッケージとして提供されているものですが、pandocはRとは独立したツールとして提供されているものです。knitrはRの処理結果を含むレポートを生成するために内部的に使用されます。 A link to this section, for example, might look like this: Note, however, that this method of providing links to sections works only in HTML, LaTeX, and ConTeXt formats. For example, markdown_strict+footnotes is strict Markdown with footnotes enabled, while markdown-footnotes-pipe_tables is pandoc’s Markdown without footnotes or pipe tables. The body of the definition (including the first line, aside from the colon or tilde) should be indented four spaces. (There should be no space between the title and the parentheses.) Bear in mind that bibliography files have to be in respective format (either BibTeX or BibLaTeX). They also make it easy to provide links from one section of a document to another. It essentially allows So, all of the following are equivalent: All three metadata fields may contain standard inline formatting (italics, links, footnotes, etc.). For example. ; page, p./pp. To make a short span of text verbatim, put it inside backticks: If the verbatim text includes a backtick, use double backticks: (The spaces after the opening backticks and before the closing backticks will be ignored.). The colons indicate column alignment as shown. If you want to include items in the bibliography without actually citing them in the body text, you can define a dummy nocite metadata field and put the citations there: In this example, the document will contain a citation for item3 only, but the bibliography will contain entries for item1, item2, and item3. (This trick does not work in all browsers, but it works in Firefox. To make your citations hyperlinks to the corresponding bibliography entries, add link-citations: true to your YAML metadata. contents, {officer} may be the right solution. For output formats other than LaTeX, pandoc will parse LaTeX \newcommand and \renewcommand definitions and apply the resulting macros to all LaTeX math. Here is a simple example: This will produce a “compact” list. This extension changes the behavior so that Markdown is only parsed inside block-level tags if the tags have the attribute markdown=1. There are two kinds of headers: Setext and ATX. The URL may optionally be surrounded by angle brackets: Note that link labels are not case sensitive. In addition to raw HTML, pandoc allows raw LaTeX, TeX, and ConTeXt to be included in a document. The CSL project provides further information on finding and editing styles. The row of =s separates the header from the table body, and can be omitted for a headerless table. In particular, to get non-default column alignment, you’ll need to add colons as above. For example: Except inside a code block or inline code, any punctuation or space character preceded by a backslash will be treated literally, even if it would normally indicate formatting. To style beamer slides, you can specify a theme, colortheme, fonttheme, innertheme, and outertheme, using the -V option: Note that header attributes will turn into slide attributes (on a